Changelog

0.0.13 (Jan 1 2023)

Added

  • Multiple -i/--input flags support in count module

  • Better single-cell ATAC-seq support

    • Setting -ul/--umi_length to 0 to disable UMI deduplication in count module

    • Option -cb_rc/--cell_barcode_reverse_complement to convert the input cell barcode sequences to reverse-complement in regex, extract and count modules

0.0.12 (Mar 9 2022)

Added

  • Non-uniform read lengths support in qc module

Fixed

  • Readability of the qc results

  • Matplotlib FixedFormatter warning

0.0.11 (Jun 17 2021)

Changed

  • Rename options -r1_coords and -r2_coords to -r1_c and -r2_c, respectively.

  • Improve logging information.